Illustrated Usage guide

Have a look at the main AViz pages here for more examples.
Changes to the GUI are minimal. In order to work with the new bonding mode you must take the following steps:

  1. Load your data file into AViz using the "File" menu.
  2. Select "Atom" from the Mode drop-box and "Spheres" in the Style drop-box    as shown in Figure 1.
  3. Enter the Bonds panel as shown in Figure 2, select the source and target particle types (as assigned in
    the first column of the input file) , then click "Present" and then check "Sequential Bonding" as shown in Figure 3.
  4. Click "Apply".
  5. To see the results compare Figure 4 and Figure 5.
main panel
Figure 1

Figure 2

bonds panel
Figure 3

polymer without bonds  
Figure 4

     polymer with bonds
Figure 5
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